Publications

Publications are organised by category below. (*: corresponding author).

See also my Google Scholar profile.

Review & position papers

  • Machine Learning With Data Assimilation and Uncertainty Quantification for Dynamical Systems: A Review
    S. Cheng, C. Quilodrán-Casas, S. Ouala, A. Farchi, C. Liu, P. Tandeo, R. Fablet, D. Lucor, B. Iooss, J. Brajard, D. Xiao, T. Janjic, W. Ding, Y. Guo, A. Carrassi, M. Bocquet, R. Arcucci
    IEEE/CAA Journal of Automatica Sinica, 10(6), 1361–1387, 2023.
  • Machine learning for modelling unstructured grid data in computational physics: A review
    S. Cheng*, M. Bocquet, W. Ding, T. S. Finn, R. Fu, J. Fu, Y. Guo, E. Johnson, S. Li, C. Liu, E. N. Moro, J. Pan, M. Piggott, C. Quilodran, P. Sharma, K. Wang, D. Xiao, X. Xue, Y. Zeng, M. Zhang, H. Zhou, K. Zhu, R. Arcucci
    Information Fusion, 123, 103255, 2025.
  • Deep learning for wildfire risk prediction: Integrating remote sensing and environmental data
    Z. Xu, J. Li, S. Cheng, X. Rui, Y. Zhao, H. He, H. Guan, A. Sharma, M. Erxleben, R. Chang, L. L. Xu
    ISPRS Journal of Photogrammetry and Remote Sensing, 227, 632–677, 2025.
  • The convergence of machine learning and data assimilation in Earth system science
    R. Arcucci, S. Healy, S. Dance, L. Lei, E. Bach, A. T. Weaver, T. Miyoshi, M. E. Dillon, C. Draper, R. Schneider, S. Lang, P. Dueben, N. Bormann, P. Lean, A. Geer, M. Bonavita, P. J. van Leeuwen, S. Cheng, M. Bocquet, N. Zagar, H. F. de Campos Velho, J. J. Ruiz, P. Bauer, S. A. Boukabara, A. Carrassi, R. Treadon, A. Collard, D. Kleist, A. Gholoubi, X. Wang, N. Samrat, G. Ralton, A. M. Moore, K. Lamer, N. Caltabiano
    npj Artificial Intelligence, 2(1), 48, 2026.

Selected recent journal publications as 1st author

  • Data-driven surrogate model with latent data assimilation: Application to wildfire forecasting
    S. Cheng, I. C. Prentice, Y. Huang, Y. Jin, Y.-K. Guo, R. Arcucci
    Journal of Computational Physics, 464, 111302, 2022.
  • Efficient deep data assimilation with sparse observations and time-varying sensors
    S. Cheng*, C. Liu, Y. Guo, R. Arcucci
    Journal of Computational Physics, 496, 112581, 2023.
  • Generalised Latent Assimilation in Heterogeneous Reduced Spaces with Machine Learning Surrogate Models
    S. Cheng, J. Chen, C. Anastasiou, P. Angeli, O. K. Matar, Y.-K. Guo, C. C. Pain, R. Arcucci
    Journal of Scientific Computing, 94(1), 11, 2022.
  • A Generative Model for Surrogates of Spatial-Temporal Wildfire Nowcasting
    S. Cheng*, Y. Guo, R. Arcucci
    IEEE Transactions on Emerging Topics in Computational Intelligence, 7(5), 1420–1430, 2023.
  • Multi-domain encoder–decoder neural networks for latent data assimilation in dynamical systems
    S. Cheng*, Y. Zhuang, L. Kahouadji, C. Liu, J. Chen, O. K. Matar, R. Arcucci
    Computer Methods in Applied Mechanics and Engineering, 430, 117201, 2024.

Selected recent journal publications as main supervisor

  • Spectral Cross-Domain Neural Network With Soft-Adaptive Threshold Spectral Enhancement
    C. Liu, S. Cheng*, W. Ding, R. Arcucci
    IEEE Transactions on Neural Networks and Learning Systems, 36(1), 692–703, 2024.
  • Multi-fidelity physics constrained neural networks for dynamical systems
    H. Zhou, S. Cheng*, R. Arcucci
    Computer Methods in Applied Mechanics and Engineering, 420, 116758, 2024.
  • Explainable AI models for predicting drop coalescence in microfluidics device
    J. Hu, K. Zhu, S. Cheng*, N. M. Kovalchuk, A. Soulsby, M. J.H. Simmons, O. K. Matar, R. Arcucci
    Chemical Engineering Journal, 481, 148465, 2024.
  • Dynamical system prediction from sparse observations using deep neural networks with Voronoi tessellation and physics constraint
    H. Wang, H. Zhou, S. Cheng*
    Computer Methods in Applied Mechanics and Engineering, 432, 117339, 2025.
  • Can foundation language models predict fluid dynamics?
    G. Wang, S. Cheng*
    Engineering Applications of Artificial Intelligence, 158, 111427, 2025.

Selected top AI conference publications

  • Machine learning based surrogate modelling and parameter identification for wildfire forecasting
    S. Cheng, R. Arcucci
    AI for Earth and Space Science Workshop at ICLR, 2022.
  • G2D: From Global to Dense Radiography Representation Learning via Vision-Language Pre-training
    C. Liu, C. Ouyang, S. Cheng, A. Shah, W. Bai, R. Arcucci
    Advances in Neural Information Processing Systems 37 (NeurIPS), 14751–14773, 2024.
  • Learning Chaos In A Linear Way
    X. Cheng, Y. He, Y. Yang, X. Xue, S. Cheng, D. Giles, X. Tang, Y. Hu
    International Conference on Learning Representations (ICLR), 2025.
  • Tensor-Var: Variational Data Assimilation in Tensor Product Feature Space
    Y. Yang, X. Cheng, D. Giles, S. Cheng, Y. He, X. Xue, B. Chen, Y. Hu
    Proceedings of the 42nd International Conference on Machine Learning (ICML), 267, 70649–70679, 2025.
  • Information Shapes Koopman Representation
    X. Cheng, W. Yuan, Y. Yang, Y. Zhang, S. Cheng, Y. He, Z. Sun
    International Conference on Learning Representations (ICLR), 2026, Oral (top 1.2%).
  • BCWildfire: A Long-term Multi-factor Dataset and Deep Learning Benchmark for Boreal Wildfire Risk Prediction
    Z. Xu, S. Cheng, L. Wang, H. He, W. Sun, J. Li, L. L. Xu
    Proceedings of the AAAI Conference on Artificial Intelligence (AAAI), 40(46), 39486–39494, 2026, Oral (top 4%).

Software publications

  • TorchDA: A Python package for performing data assimilation with deep learning forward and transformation functions
    S. Cheng*, J. Min, C. Liu, R. Arcucci
    Computer Physics Communications, 306, 109359, 2024.
  • PyTorchFire: A GPU-accelerated wildfire simulator with Differentiable Cellular Automata
    Z. Xia, S. Cheng*
    Environmental Modelling & Software, 188, 106401, 2025.

Other Journal publications

  • Fast-forward prediction of lattice Boltzmann dynamics with physics-informed neural operators
    X. Xue, M. F. P. ten Eikelder, M. Gao, X. Cheng, Y. Yang, Y. He, S. Wang, S. Cheng, Y. Hu, P. V. Coveney
    Nature Communications, 17(1), 9243, 2026.
  • Predicting spatio-temporal wildfire propagation with dynamic firebreaks
    J. Zheng, Z. Xu, R. Arcucci, S. P. Harrison, L. L. Xu, S. Cheng*
    Natural Hazards and Earth System Sciences, 26(6), 2871–2895, 2026.
  • A probabilistic approach to wildfire spread prediction using a denoising diffusion surrogate model
    W. Yu, A. Ghosh, T. S. Finn, R. Arcucci, M. Bocquet, S. Cheng*
    Geoscientific Model Development, 19(2), 1027–1054, 2026.
  • Elucidating the performance of data assimilation neural networks for chaotic dynamics
    M. Bocquet, T. S. Finn, S. Cheng, A. Farchi
    Nonlinear Processes in Geophysics, 33(3), 401–424, 2026.
  • Non‐Gaussian Assimilation of Atmospheric and Oceanic Data in Latent Space for Paleoclimate Reconstruction
    Z. Lin, S. Zhang, Z. Liu, Y. Jin, L. Wan, S. Cheng, Y. Gao, X. Yu, M. Li
    Journal of Advances in Modeling Earth Systems, 18(7), e2026MS005767, 2026.
  • Bridging idealized and operational models: an explainable AI framework for Earth system emulators
    P. Behnoudfar, C. Moser, M. Bocquet, S. Cheng, N. Chen
    npj Climate and Atmospheric Science, 9(1), 65, 2026.
  • Rooftop wind field reconstruction using sparse sensors: From deterministic to generative learning methods
    Y. Zhou, C. Lin, H. Kikumoto, R. Ooka, S. Cheng*
    Building and Environment, 296, 114480, 2026.
  • Spatiotemporal system forecasting with irregular time steps via masked autoencoder
    K. Zhu, Y. Xin, J. Hu, X. Cheng, Y. Yang, S. Cheng*
    Physica D: Nonlinear Phenomena, 492, 135189, 2026.
  • Improving long-term autoregressive spatiotemporal predictions: A proof of concept with fluid dynamics
    H. Zhou, S. Cheng*
    Computer Methods in Applied Mechanics and Engineering, 447, 118332, 2025.
  • AI-Empowered Latent Four-dimensional Variational Data Assimilation for River Discharge Forecasting
    K. Wang, G. Bertoli, S. Cheng, K. Schröter, E. Caporali, M. D. Piggott, Y. Wang, R. Arcucci
    IEEE Journal of Selected Topics in Applied Earth Observations and Remote Sensing, 18, 24676–24689, 2025.
  • Latent data assimilation with non‐explicit observation operator in hydrology
    K. Wang, S. Cheng, M. D. Piggott, S. L. Dance, Y. Wang, R. Arcucci
    Quarterly Journal of the Royal Meteorological Society, 151(772), e5009, 2025.
  • Spatially-aware diffusion models with cross-attention for global field reconstruction with sparse observations
    Y. Zhuang, S. Cheng, K. Duraisamy
    Computer Methods in Applied Mechanics and Engineering, 435, 117623, 2025.
  • ViTAE-SL: A vision transformer-based autoencoder and spatial interpolation learner for field reconstruction
    H. Fan, S. Cheng, A. J. de Nazelle, R. Arcucci
    Computer Physics Communications, 308, 109464, 2025.
  • Fire-Image-DenseNet (FIDN) for predicting wildfire burnt area using remote sensing data
    B. Pang, S. Cheng*, Y. Huang, Y. Jin, Y. Guo, I. C. Prentice, S. P. Harrison, R. Arcucci
    Computers & Geosciences, 195, 105783, 2025.
  • Optimisation of microfluidic synthesis of silver nanoparticles via data-driven inverse modelling
    K. Nathanael, S. Cheng, N. M. Kovalchuk, R. Arcucci, M. J.H. Simmons
    Chemical Engineering Research and Design, 216, 523–530, 2025.
  • Deep Learning Surrogate Models of JULES-INFERNO for Wildfire Prediction on a Global Scale
    S. Cheng*, H. Chassagnon, M. Kasoar, Y. Guo, R. Arcucci
    IEEE Transactions on Emerging Topics in Computational Intelligence, 9(1), 444–454, 2024.
  • Explainable AI model for predicting equivalent viscous damping in dual frame–wall resilient system
    C. Xie, J. Hu, G. Vasdravellis, X. Wang, S. Cheng*
    Journal of Building Engineering, 96, 110564, 2024.
  • Exploring unseen 3D scenarios of physics variables using machine learning-based synthetic data: An application to wave energy converters
    C. Quilodrán-Casas, Q. Li, N. Zhang, S. Cheng, S. Yan, Q. Ma, R. Arcucci
    Environmental Modelling & Software, 177, 106051, 2024.
  • Liquid–Liquid Dispersion Performance Prediction and Uncertainty Quantification Using Recurrent Neural Networks
    F. Liang, J. P. Valdes, S. Cheng, L. Kahouadji, S. Shin, J. Chergui, D. Juric, R. Arcucci, O. K. Matar
    Industrial & Engineering Chemistry Research, 63(17), 7853–7875, 2024.
  • Reactor field reconstruction from sparse and movable sensors using Voronoi tessellation-assisted convolutional neural networks
    H.-L. Gong, H. Li, D. Xiao, S. Cheng*
    Nuclear Science and Techniques, 35(5), 43, 2024.
  • Reduced-order digital twin and latent data assimilation for global wildfire prediction
    C. Zhong, S. Cheng*, M. Kasoar, R. Arcucci
    Natural Hazards and Earth System Sciences, 23(5), 1755–1768, 2023.
  • Predicting drop coalescence in microfluidic device with a deep learning generative model
    K. Zhu, S. Cheng*, N. Kovalchuk, M. Simmons, Y.-K. Guo, O. K. Matar, R. Arcucci
    Physical Chemistry Chemical Physics, 25(23), 15744–15755, 2023.
  • Accurate identification and measurement of the precipitate area by two-stage deep neural networks in novel chromium-based alloys
    Z. Xia, K. Ma, S. Cheng*, T. Blackburn, Z. Peng, K. Zhu, W. Zhang, D. Xiao, A. J. Knowles, R. Arcucci
    Physical Chemistry Chemical Physics, 25(23), 15970–15987, 2023.
  • Optimization of microfluidic synthesis of silver nanoparticles: A generic approach using machine learning
    K. Nathanael, S. Cheng, N. M. Kovalchuk, R. Arcucci, M. J.H. Simmons
    Chemical Engineering Research and Design, 193, 65–74, 2023.
  • A non‐linear non‐intrusive reduced order model of fluid flow by auto‐encoder and self‐attention deep learning methods
    R. Fu, D. Xiao, I.M. Navon, F. Fang, L. Yang, C. Wang, S. Cheng
    International Journal for Numerical Methods in Engineering, 124(13), 3087–3111, 2023.
  • Parameter Flexible Wildfire Prediction Using Machine Learning Techniques: Forward and Inverse Modelling
    S. Cheng, Y. Jin, S. P. Harrison, C. Quilodrán-Casas, I. C. Prentice, Y.-K. Guo, R. Arcucci
    Remote Sensing, 14(13), 3228, 2022.
  • Observation error covariance specification in dynamical systems for data assimilation using recurrent neural networks
    S. Cheng*, M. Qiu
    Neural Computing and Applications, 34(16), 13149–13167, 2022.
  • Ensemble latent assimilation with deep learning surrogate model: application to drop interaction in a microfluidics device
    Y. Zhuang, S. Cheng*, N. Kovalchuk, M. Simmons, O. K. Matar, Y.-K. Guo, R. Arcucci
    Lab on a Chip, 22(17), 3187–3202, 2022.
  • Computational fluid dynamics simulations of phase separation in dispersed oil-water pipe flows
    J. Chen, C. Anastasiou, S. Cheng, N. M. Basha, L. Kahouadji, R. Arcucci, P. Angeli, O. K. Matar
    Chemical Engineering Science, 267, 118310, 2022.
  • An efficient digital twin based on machine learning SVD autoencoder and generalised latent assimilation for nuclear reactor physics
    H. Gong, S. Cheng, Z. Chen, Q. Li, C. Quilodrán-Casas, D. Xiao, R. Arcucci
    Annals of Nuclear Energy, 179, 109431, 2022.
  • Data-Enabled Physics-Informed Machine Learning for Reduced-Order Modeling Digital Twin: Application to Nuclear Reactor Physics
    H. Gong, S. Cheng, Z. Chen, Q. Li
    Nuclear Science and Engineering, 196(6), 668–693, 2022.
  • Observation data compression for variational assimilation of dynamical systems
    S. Cheng*, D. Lucor, J.-P. Argaud
    Journal of Computational Science, 53, 101405, 2021.
  • A Graph Clustering Approach to Localization for Adaptive Covariance Tuning in Data Assimilation Based on State-Observation Mapping
    S. Cheng, J.-P. Argaud, B. Iooss, D. Lucor, A. Ponçot
    Mathematical Geosciences, 53(8), 1751–1780, 2021.
  • Error covariance tuning in variational data assimilation: application to an operating hydrological model
    S. Cheng, J.-P. Argaud, B. Iooss, D. Lucor, A. Ponçot
    Stochastic Environmental Research and Risk Assessment, 35(5), 1019–1038, 2020.
  • Background error covariance iterative updating with invariant observation measures for data assimilation
    S. Cheng, J.-P. Argaud, B. Iooss, D. Lucor, A. Ponçot
    Stochastic Environmental Research and Risk Assessment, 33(11-12), 2033–2051, 2019.
  • Rock–paper–scissors dynamics from random walks on temporal multiplex networks
    M. Gueuning, S. Cheng, R. Lambiotte, J.-C. Delvenne
    Journal of Complex Networks, 8(2), cnz027, 2019.

Last updated: 20 October 2026.